Prioritization of vigor QTL-associated genes for future genome-directed Vitis breeding: Priorización de genes relacionados a vigor en Vitis
Vigor control in grapevine may become especially important under climate change. A better understanding of gene-phenotype relationships is required in order to exploit plant genomics for breeding purposes. This research aims to use quantitative trait loci (QTLs) for vigor identified in the progeny f...
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| Autores principales: | , , , , , , |
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| Formato: | Online |
| Lenguaje: | eng |
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Facultad de Ciencias Agrarias-UNCuyo
2021
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| Acceso en línea: | https://revistas.uncu.edu.ar/ojs3/index.php/RFCA/article/view/4730 |
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Universidad Nacional de Cuyo |
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Revistas en línea |
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Revistas en línea |
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Revista de la Facultad de Ciencias Agrarias |
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Revista de la Facultad de Ciencias Agrarias |
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I-11 |
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R-107 |
| language |
eng |
| format |
Online |
| author |
Hugalde, Inés Paolinelli, Marcos Agüero, Cecilia B. Riaz, Summaira Gómez Talquenca, Sebastián Walker, M. Andrew Vila, Hernán |
| spellingShingle |
Hugalde, Inés Paolinelli, Marcos Agüero, Cecilia B. Riaz, Summaira Gómez Talquenca, Sebastián Walker, M. Andrew Vila, Hernán Prioritization of vigor QTL-associated genes for future genome-directed Vitis breeding: Priorización de genes relacionados a vigor en Vitis proceso biológico ontología génica mapeo de QTL vigor priorización de genes biological processes gene ontology QTL map vigor gene prioritization |
| author_facet |
Hugalde, Inés Paolinelli, Marcos Agüero, Cecilia B. Riaz, Summaira Gómez Talquenca, Sebastián Walker, M. Andrew Vila, Hernán |
| author_sort |
Hugalde, Inés |
| title |
Prioritization of vigor QTL-associated genes for future genome-directed Vitis breeding: Priorización de genes relacionados a vigor en Vitis |
| title_short |
Prioritization of vigor QTL-associated genes for future genome-directed Vitis breeding: Priorización de genes relacionados a vigor en Vitis |
| title_full |
Prioritization of vigor QTL-associated genes for future genome-directed Vitis breeding: Priorización de genes relacionados a vigor en Vitis |
| title_fullStr |
Prioritization of vigor QTL-associated genes for future genome-directed Vitis breeding: Priorización de genes relacionados a vigor en Vitis |
| title_full_unstemmed |
Prioritization of vigor QTL-associated genes for future genome-directed Vitis breeding: Priorización de genes relacionados a vigor en Vitis |
| title_sort |
prioritization of vigor qtl-associated genes for future genome-directed vitis breeding: priorización de genes relacionados a vigor en vitis |
| description |
Vigor control in grapevine may become especially important under climate change. A better understanding of gene-phenotype relationships is required in order to exploit plant genomics for breeding purposes. This research aims to use quantitative trait loci (QTLs) for vigor identified in the progeny from a cross of Ramsey (Vitis champinii) × Riparia Gloire (V. riparia). Genes located 700 kb up and downstream from each QTL position were interrogated for functional enrichment through ShinyGO online tool, based on the gene ontology annotation of Vitis vinifera PN40024. Key biological processes like phloem and xylem development, cell cycle, response to hormones, amino acid transport, tissue development, sugar metabolism, nitrogen transport, and stress/immune responses, showed functional enrichment. Integral response to light and auxin might be required for fine molecular tuning of vegetative growth in Vitis. Fifty out of 1318 candidate genes were prioritized, reducing their amount to a manageable number of candidates for further directed breeding strategies.
Highlights
Plant vigor control may become especially important under climate change.
Genes from various vigor-related QTLs were interrogated for functional enrichment.
The analysis reduced candidate gene number based on marker proximity and functional enrichment, constituting a suitable shortcut for target-directed genome-guided breeding strategies.
Three TFs are strong candidates for targeted breeding: TIF - HY5, TIF - SUS1, TIF - VOZ1 potentially enhance growth by relating light response to hormone activation, and then to photosynthesis and morphogenesis.
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| publisher |
Facultad de Ciencias Agrarias-UNCuyo |
| publishDate |
2021 |
| url |
https://revistas.uncu.edu.ar/ojs3/index.php/RFCA/article/view/4730 |
| topic |
proceso biológico ontología génica mapeo de QTL vigor priorización de genes biological processes gene ontology QTL map vigor gene prioritization |
| topic_facet |
proceso biológico ontología génica mapeo de QTL vigor priorización de genes biological processes gene ontology QTL map vigor gene prioritization |
| work_keys_str_mv |
AT hugaldeines prioritizationofvigorqtlassociatedgenesforfuturegenomedirectedvitisbreedingpriorizaciondegenesrelacionadosavigorenvitis AT paolinellimarcos prioritizationofvigorqtlassociatedgenesforfuturegenomedirectedvitisbreedingpriorizaciondegenesrelacionadosavigorenvitis AT agueroceciliab prioritizationofvigorqtlassociatedgenesforfuturegenomedirectedvitisbreedingpriorizaciondegenesrelacionadosavigorenvitis AT riazsummaira prioritizationofvigorqtlassociatedgenesforfuturegenomedirectedvitisbreedingpriorizaciondegenesrelacionadosavigorenvitis AT gomeztalquencasebastian prioritizationofvigorqtlassociatedgenesforfuturegenomedirectedvitisbreedingpriorizaciondegenesrelacionadosavigorenvitis AT walkermandrew prioritizationofvigorqtlassociatedgenesforfuturegenomedirectedvitisbreedingpriorizaciondegenesrelacionadosavigorenvitis AT vilahernan prioritizationofvigorqtlassociatedgenesforfuturegenomedirectedvitisbreedingpriorizaciondegenesrelacionadosavigorenvitis |
| _version_ |
1800220931163947008 |
| spelling |
I11-R107article-47302022-02-16T18:25:29Z Prioritization of vigor QTL-associated genes for future genome-directed Vitis breeding: Priorización de genes relacionados a vigor en Vitis Prioritization of vigor QTL-associated genes for future genome-directed Vitis breeding: Priorización de genes relacionados a vigor en Vitis Hugalde, Inés Paolinelli, Marcos Agüero, Cecilia B. Riaz, Summaira Gómez Talquenca, Sebastián Walker, M. Andrew Vila, Hernán proceso biológico ontología génica mapeo de QTL vigor priorización de genes biological processes gene ontology QTL map vigor gene prioritization Vigor control in grapevine may become especially important under climate change. A better understanding of gene-phenotype relationships is required in order to exploit plant genomics for breeding purposes. This research aims to use quantitative trait loci (QTLs) for vigor identified in the progeny from a cross of Ramsey (Vitis champinii) × Riparia Gloire (V. riparia). Genes located 700 kb up and downstream from each QTL position were interrogated for functional enrichment through ShinyGO online tool, based on the gene ontology annotation of Vitis vinifera PN40024. Key biological processes like phloem and xylem development, cell cycle, response to hormones, amino acid transport, tissue development, sugar metabolism, nitrogen transport, and stress/immune responses, showed functional enrichment. Integral response to light and auxin might be required for fine molecular tuning of vegetative growth in Vitis. Fifty out of 1318 candidate genes were prioritized, reducing their amount to a manageable number of candidates for further directed breeding strategies. Highlights Plant vigor control may become especially important under climate change. Genes from various vigor-related QTLs were interrogated for functional enrichment. The analysis reduced candidate gene number based on marker proximity and functional enrichment, constituting a suitable shortcut for target-directed genome-guided breeding strategies. Three TFs are strong candidates for targeted breeding: TIF - HY5, TIF - SUS1, TIF - VOZ1 potentially enhance growth by relating light response to hormone activation, and then to photosynthesis and morphogenesis. Vigor control in grapevine may become especially important under climate change. A better understanding of gene-phenotype relationships is required in order to exploit plant genomics for breeding purposes. This research aims to use quantitative trait loci (QTLs) for vigor identified in the progeny from a cross of Ramsey (Vitis champinii) × Riparia Gloire (V. riparia). Genes located 700 kb up and downstream from each QTL position were interrogated for functional enrichment through ShinyGO online tool, based on the gene ontology annotation of Vitis vinifera PN40024. Key biological processes like phloem and xylem development, cell cycle, response to hormones, amino acid transport, tissue development, sugar metabolism, nitrogen transport, and stress/immune responses, showed functional enrichment. Integral response to light and auxin might be required for fine molecular tuning of vegetative growth in Vitis. Fifty out of 1318 candidate genes were prioritized, reducing their amount to a manageable number of candidates for further directed breeding strategies. Highlights Plant vigor control may become especially important under climate change. Genes from various vigor-related QTLs were interrogated for functional enrichment. The analysis reduced candidate gene number based on marker proximity and functional enrichment, constituting a suitable shortcut for target-directed genome-guided breeding strategies. Three TFs are strong candidates for targeted breeding: TIF - HY5, TIF - SUS1, TIF - VOZ1 potentially enhance growth by relating light response to hormone activation, and then to photosynthesis and morphogenesis. Facultad de Ciencias Agrarias-UNCuyo 2021-12-01 info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion application/pdf https://revistas.uncu.edu.ar/ojs3/index.php/RFCA/article/view/4730 10.48162/rev.39.036 Revista de la Facultad de Ciencias Agrarias UNCuyo; Vol. 53 No. 2 (2021): July-December; 27-35 Revista de la Facultad de Ciencias Agrarias UNCuyo; Vol. 53 Núm. 2 (2021): Julio-Diciembre; 27-35 1853-8665 0370-4661 eng https://revistas.uncu.edu.ar/ojs3/index.php/RFCA/article/view/4730/4005 Derechos de autor 2021 Revista de la Facultad de Ciencias Agrarias UNCuyo https://creativecommons.org/licenses/by-nc-sa/3.0/deed.es |
